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PyMOL Wiki. Y, z values in the form of a Pseudoatom (rather than a CGO sphere) The benefit of using a Pseudoatom is that it can be selected...

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Open Book Developers: FuzzyWuzzyGames Shares Their Experiences Developing for the Wii U and Views of Nintendo Today
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Light count

add PyMOl API syntax ← Older revision Revision as of 13:02, 8 June 2015 Line 1: Line 1: == Overview == == Overview == − set [[light_count]] definies the number of light sources.<br> + set [[light_count]] defines the number of light...
Plugins

Using Fink: Change title of section to reflect additonal package managers. Fix link for Fink, add links for MacPorts and Homebrew. Update install example to refer to pymol-py27 fink package and remove unnecessary tags. ← Older revision Revision as...
Pytms

Correct link to raw plugin file in repo. ← Older revision Revision as of 21:02, 7 June 2015 (One intermediate revision by one user not shown) Line 1: Line 1: {{Infobox script-repo {{Infobox script-repo |type = plugin |type = plugin...
Talk:Normalize ccp4 maps

New page == Discussions about isolevel discrepancy between PyMOL and Coot == * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=COOT&D=0#3 * https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=ccp4bb&D=0#16 == PyMOL normalizes...
Display CCP4 Maps

cover "asymmetric unit" instead of "all atoms in PDB file" ← Older revision Revision as of 15:19, 5 June 2015 Line 4: Line 4: FFT-Create Map'' option under ''Map & Mask Utilities'') You can create a FFT-Create Map'' option under ''Map &#38...

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PyMOLWiki

Description This script calculates the true center-of-mass (COM) or the center-of-geometry (COG) for a given selection and returns the x, y, z values in the form of a Pseudoatom (rather than a CGO sph...
Caver2 - PyMOLWiki

Caver2 This code has been put under version control in the project Pymol-script-repo CAVER 2.0 is a software tool for protein analysis leading to detection of channels. Channels are in fact void pat...

Cealign - PyMOLWiki

Cealign cealign superposition of 1c0mB and 1bco cealign aligns two proteins using the CE algorithm. It is very robust for proteins with little to no sequence similarity (twilight zone). For proteins w...